UW Stat Gen faculty
| BADGER
| Bayesian Analysis to Describe Genomic Evolution by Rearrangement (BADGER) is a free software package for the Bayesian analysis of phylogenies. The package includes programs for analyzing genome arrangements including mitochondrial DNA.
| Bret Larget
|
| BAMBE
| Bayesian Analysis in Molecular Biology and Evolution (BAMBE) is a free software package for the Bayesian analysis of phylogenies. The package includes programs for analyzing aligned DNA or RNA sequence data and allows data sets with gaps or indeterminate sites.
| Bret Larget
|
| BUCKy
| Combines molecular data from multiple loci to estimate the dominant history of sampled individuals and how much of the genome supports each relationship, using Bayesian concordance analysis.
| Cécile Ané,
Bret Larget
|
| EBarrays
| An R package with tools for the analysis of replicated/unreplicated microarray data.
| Christina Kendziorski,
Michael Newton
|
| R/qtl
| An R package for mapping quantitative trait loci (QTL) in experimental crosses
| Karl Broman,
Brian Yandell
|
| R/qtlbim
| An R package providing a Bayesian model selection approach to map multiple interacting QTL.
| Brian Yandell
|